Function reference • rSubmitter

Main functions Functions and classes to communicate, submit jobs, and parallelize tasks using a SLURM cluster
`Job`	Class for individual SLURM job submission and management
`JobArray`	Class for efficient multi-job SLURM submission and management
`superApply()`	Efficient parallel lapply using a SLURM cluster
Side fucntions Functions to do simple operations in a SLURM cluster
`cancelJob()`	Cancels a SLURM job
`getJobState()`	Gets the job state(s) of one or more SLURM jobs
`getJobNumber()`	Gets the number of existing SLURM jobs for a given user
`getMaxJobArrayLength()`	Gets maximum length for a Job array in the current SLURM cluster
Helper functions Internally used functions and classes
`JobInfo`	Parent class of Job and JobArray
`grepTempFile()`	From an existing file, creates a new one containing a given string
`isWriteable()`	Returns TRUE if the path is writeable
`parseArg()`	Converts string into vector using a separator
`printTime()`	Prints message with current time and date
`shellCmdExists()`	Check if shell command exists
`systemSubmit()`	systemSubmit
`trim()`	Trims white space
`createJobScriptsData()`	Helper of superApply
`createStringFunction()`	Helper of superApply
`getJobArray()`	Helper of superApply
`getPartitionIndeces()`	Helper of superApply
`getUserFunctions()`	Helper of superApply
`getUserPackages()`	Helper of superApply
`mergeListDir()`	Helper of superApply

Reference